PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna16598.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family ERF
Protein Properties Length: 299aa    MW: 32945.3 Da    PI: 6.8702
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna16598.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.12.1e-184695255
                      AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                             ++ GVr+++ +grWvAeI+d +   ++ r +lg+f taeeAa+a+++a+  l+g
  mrna16598.1-v1.0-hybrid 46 KFVGVRQRP-SGRWVAEIKDTT---QKIRMWLGTFETAEEAARAYDEAACLLRG 95
                             799******.7*********32...35**********************99998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.6E-134695IPR001471AP2/ERF domain
SMARTSM003807.8E-3546109IPR001471AP2/ERF domain
SuperFamilySSF541713.07E-1946103IPR016177DNA-binding domain
PROSITE profilePS5103219.54646103IPR001471AP2/ERF domain
CDDcd000185.03E-3146102No hitNo description
Gene3DG3DSA:3.30.730.109.4E-2846103IPR001471AP2/ERF domain
PRINTSPR003671.1E-74758IPR001471AP2/ERF domain
PRINTSPR003671.1E-76985IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MEFQFQQQKQ ISFPAGAQTH RASGIPISRK GNKLKGGKNR SNNINKFVGV RQRPSGRWVA  60
EIKDTTQKIR MWLGTFETAE EAARAYDEAA CLLRGNNTRT NFITHVSLDS PLASRIQNLL  120
NTKKPGPNCK QQIQRTSSTT SSTASHPPTA KSTSSTSTST SSTSKSCVSS EVSNQESSNH  180
QFSDVYKPDL SNCHQHPFDQ LSTSTTSSSS YQSNLSWGDG FSFAQQMFET PKDEAALSTE  240
LTSVDEGGDS DDLLEFERMK VERQISASLY AMNGVQEYMD TIHDANEALW DLQPFCAL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004304759.10.0PREDICTED: ethylene-responsive transcription factor RAP2-11-like
TrEMBLM5VRY31e-110M5VRY3_PRUPE; Uncharacterized protein
STRINGGLYMA19G29000.17e-91(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33413069
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.17e-27related to AP2 11